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Published Research

Roche NimbleGen array technology has helped power the research behind 100+ peer-reviewed publications. Search our publication list to learn more about our technology and the science it supports.

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A burst of segmental duplications in the genome of the African great ape ancestor.

Marques-Bonet T
, Kidd J, Ventura M, Graves T, Cheng Z, Hillier L, Jiang Z, Baker C, Malfavon-Borja R, Fulton L, Alkan C, Aksay G, Girirajan S, Siswara P, Chen L, Cardone MF, Navarro A, Mardis E, Wilson R, and Eichler E.
Nature
 457 (7231), 877-881.
12 Feb 2009
CGH/CNV

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Martinez D
, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavín JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, and Cullen D.
Proceedings of the National Academy of Sciences of the United States of America
 106 (6), 1954-1959.
10 Feb 2009
Gene Expression

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores.

Irizarry R
, Ladd-Acosta C, Wen B, Wu Z, Montano C, Onyango P, Cui H, Gabo K, Rongione M, Webster M, Ji H, Potash J, Sabunciyan S, and Feinberg A.
Nature genetics
 41 (2), 178-186.
Feb 2009
DNA Methylation

Gene expression profile and pathogenicity of biofilm-forming Prevotella intermedia strain 17.

Yamanaka T
, Furukawa T, Matsumoto-Mashimo C, Yamane K, Sugimori C, Nambu T, Mori N, Nishikawa H, Walker C, Leung K, and Fukushima H.
BMC microbiology
 9, 11.
16 Jan 2009
Gene Expression

The iron/heme regulated genes of Haemophilus influenzae

Whitby P
, Seale T, Vanwagoner T, Morton D, and Stull T.
BMC genomics
 10, 6.
7 Jan 2009
Gene Expression

Rapid high resolution single nucleotide polymorphism-comparative genome hybridization mapping in Caenorhabditis elegans.

Flibotte S
, Edgley ML, Maydan J, Taylor J, Zapf R, Waterston R, and Moerman DG.
Genetics
 181 (1), 33-37.
Jan 2009
CGH/CNV

Effects of long-term administration of 9-cis-retinyl acetate on visual function in mice.

Maeda T
, Maeda A, Leahy P, Saperstein DA, and Palczewski K.
Investigative ophthalmology & visual science
 50 (1), 322-333.
Jan 2009
Gene Expression

A functional gene array for detection of bacterial virulence elements.

Jaing C
, Gardner S, McLoughlin K, Mulakken N, Alegria-Hartman M, Banda P, Williams P, Gu P, Wagner M, Manohar C, and Slezak T.
PloS one
 3 (5), e2163.
2008
DNA Methylation

The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis.

Whittle CM
, McClinic KN, Ercan S, Zhang X, Green RD, Kelly WG, and Lieb JD.
PLoS genetics
 4 (9), e1000187.
2008
ChIP-chip

Genetic and systems level analysis of Drosophila sticky/citron kinase and dFmr1 mutants reveals common regulation of genetic networks.

Bauer CR
, Epstein AM, Sweeney SJ, Zarnescu DC, and Bosco G.
BMC systems biology
 2, 101.
2008
Gene Expression