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Published Research

Roche NimbleGen array technology has helped power the research behind 100+ peer-reviewed publications. Search our publication list to learn more about our technology and the science it supports.

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Prospero acts as a binary switch between self-renewal and differentiation in Drosophila neural stem cells.

Choksi SP
, Southall TD, Bossing T, Edoff K, de Wit E, Fischer BE, van Steensel B, Micklem G, and Brand AH.
Developmental cell
 11 (6), 775-789.
Dec 2006
ChIP-chip

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

Zilberman D
, Gehring M, Tran R, Ballinger T, and Henikoff S.
Nat Genet
 advanced online publication (1), 61-69.
26 Nov 2006
DNA Methylation

Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale.

Herring C
, Raghunathan A, Honisch C, Patel T, Applebee MK, Joyce A, Albert T, Blattner F, van den Boom D, Cantor C, and Palsson B.
Nat Genet
 advanced online publication (12), 1406-1412.
5 Nov 2006
CGS

Insights into social insects from the genome of the honeybee Apis mellifera.

Sequencing H

Nature
 443 (7114), 931-949.
26 Oct 2006
Gene Expression

Identification of estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis.

Li RW
, Meyer MJ, Van Tassell CP, Sonstegard TS, Connor EE, Van Amburgh ME, Boisclair YR, and Capuco AV.
Physiological genomics
 27 (1), 42-53.
3 Oct 2006
Gene Expression

TOS9 regulates white-opaque switching in Candida albicans.

Srikantha T
, Borneman AR, Daniels KJ, Pujol C, Wu W, Seringhaus MR, Gerstein M, Yi S, Snyder M, and Soll DR.
Eukaryotic cell
 5 (10), 1674-1687.
Oct 2006
ChIP-chip

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).

Tuskan GA
, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, and Rokhsar D.
Science (New York, N.Y.)
 313 (5793), 1596-1604.
15 Sep 2006
Gene Expression

Mouse genomic representational oligonucleotide microarray analysis

Lakshmi B
, Hall IM, Egan C, Alexander J, Leotta A, Healy J, Zender L, Spector MS, Xue W, Lowe SW, Wigler M, and Lucito R.
Proceedings of the National Academy of Sciences of the United States of America
 103 (30), 11234-11239.
25 Jul 2006
CGH/CNV

Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants.

Thibaud-Nissen F
, Wu H, Richmond T, Redman JC, Johnson C, Green R, Arias J, and Town CD.
The Plant journal : for cell and molecular biology
 47 (1), 152-162.
Jul 2006
ChIP-chip

Genetic changes that correlate with reduced susceptibility to daptomycin in Staphylococcus aureus.

Friedman L
, Alder JD, and Silverman JA.
Antimicrobial agents and chemotherapy
 50 (6), 2137-2145.
Jun 2006
CGS