Published Research

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An evaluation of Comparative Genome Sequencing (CGS) by comparing two previously-sequenced bacterial genomes.

Herring CD
, and Palsson BO.
BMC Genomics
 8 (1), 274.
14 Aug 2007
CGS

Differential stability and trade-off effects of pathoadaptive mutations in the Escherichia coli FimH adhesin.

Weissman SJ
, Beskhlebnaya V, Chesnokova V, Chattopadhyay S, Stamm WE, Hooton TM, and Sokurenko EV.
Infection and immunity
 75 (7), 3548-3555.
Jul 2007
CGS

Virulence potential of Ehrlichia chaffeensis strains of distinct genome sequences.

Miura K
, and Rikihisa Y.
Infection and immunity
 75 (7), 3604-3613.
Jul 2007
CGS

Mutations in rsmG, encoding a 16S rRNA methyltransferase, result in low-level streptomycin resistance and antibiotic overproduction in Streptomyces coelicolor A3(2).

Nishimura K
, Hosaka T, Tokuyama S, Okamoto S, and Ochi K.
Journal of bacteriology
 189 (10), 3876-3883.
May 2007
CGS

Efficient target-selected mutagenesis in Caenorhabditis elegans

Cuppen E
, Gort E, Hazendonk E, Mudde J, van de Belt J, Nijman IJ, Guryev V, and Plasterk RHA.
Genome Research
 17 (5), 649-6080607.
6 Apr 2007
CGS

Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1.

Kane S
, Chakicherla A, Chain P, Schmidt R, Shin M, Legler T, Scow K, Larimer F, Lucas S, Richardson P, and Hristova K.
The Journal of Bacteriology
 189 (5), 1931-1945.
1 Mar 2007
CGS

Loss of a conserved 7-methylguanosine modification in 16S rRNA confers low-level streptomycin resistance in bacteria.

Okamoto S
, Tamaru A, Nakajima C, Nishimura K, Tanaka Y, Tokuyama S, Suzuki Y, and Ochi K.
Molecular microbiology
 63 (4), 1096-1106.
Feb 2007
CGS

Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale.

Herring C
, Raghunathan A, Honisch C, Patel T, Applebee MK, Joyce A, Albert T, Blattner F, van den Boom D, Cantor C, and Palsson B.
Nat Genet
 advanced online publication (12), 1406-1412.
5 Nov 2006
CGS

Genetic changes that correlate with reduced susceptibility to daptomycin in Staphylococcus aureus.

Friedman L
, Alder JD, and Silverman JA.
Antimicrobial agents and chemotherapy
 50 (6), 2137-2145.
Jun 2006
CGS

Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms.

Zhang W
, Qi W, Albert TJ, Motiwala AS, Alland D, Hyytia-Trees EK, Ribot EM, Fields PI, Whittam TS, and Swaminathan B.
Genome research.
 16 (6), 757-767.
Jun 2006
CGS

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