NimbleGen Systems has developed a suite of software tools to facilitate the data pipeline from array design to image extraction and analysis to the graphical display and browsing of large datasets. The software has been designed with the objectives of ease of use, easy to understand graphical interfaces and conformance to industry standard file formats for large genomic datasets.
For NimbleGen applications where data is mapped to genomic tracks, the SignalMap browser provides a simple browsing interface. Data in GFF file formats can be readily imported and analyzed with no limitations on the number of datapoints. When imported annotation files contain embedded URL information, clicking on genomic features such as genes launches your web browser and directs you to the associated public database information for that gene.
For high-volume users, NimbleScan can give you your own array data pipeline. Input array images and NimbleScan can automatically place an accurately aligned grid and extract data from 1 or 2 color images. Advanced reporting capabilities provide application-specific analysis of CGH, Expression, Microbial Resequencing and ChIP-chip array datasets for easy interpretation of experimental results.
The DNASTAR ArrayStar v 2.0 software is a gene expression analysis package that provides users with a wide range of tools useful in the expression pattern analysis, identifying groups of co-regulated genes, identifying relative expression levels of genes and annotating groups of genes by functionality. The software provides users with clustering (hierarchical and k-Means) methods, line graphs, scatter plot capabilities and a wide range of statistical analysis tools. Annotations can be imported and edited. Gene tables can be constructed, edited and exported. NimbleGen expression files are easily imported.
Use the table below to identify the appropriate software packages to use with our product offerings.
Inquire about site licenses by contacting Software Sales.
For technical support, contact Technical Support.
