SeqCap EZ Developer Library

Format: 2.1 million long oligonucleotides in solution
Source: Customer-defined
Build: Customer-defined
Design: Based on researcher provided target regions.
Automation: An automated solution for SeqCap EZ Developer Library using the Caliper Sciclone NGS workstation is now available.
Description Target Region Volume per Reaction Catalog Number Pack Size Ordering*
SeqCap EZ Developer Library Less than 100kb. Greater than 50Mb for human or non-human. 4.5 µl 06740278001 4 reactions Buy Online Button
06471684001 12 reactions
06471706001 24 reactions
06471714001 48 reactions
06471722001 96 reactions
06471749001 384 reactions
06471757001 960 reactions
* Availability of products varies from country to country.


Advantages

SeqCap EZ Developer Library provides you the power of up to 2.1 million probes to design your genome specific capture experiment. Built on the same high efficiency target enrichment technology as SeqCap EZ Exome Library, you can now sequence targeted regions of virtually any genome

  • Apply our proven capture technology to your research
  • Experience high efficiency target enrichment
  • Maximize variant discovery while minimizing costs

Figure 1

Figure 1

Figure 1. NimbleGen Sequence Capture design utilizes many more probes than other methods, and this brings important advantages for capture performance. Simple Tiling Designs (Panel A) offer up to 55,000 120mer probes (baits) tiled across the region. NimbleGen Sequence Capture Designs (Panel B) offer up to 2,100,000 50-105mer probes selected for the region using a special algorithm. This dramatic increase in probes (38X) offers the following benefits:
• More attempts for every target base
• Redundancy to reduce risk
• Ability to redisribute probes for better uniformity


Figure 2

Figure 2

Figure 2. Comparing to simple tiling design, probes are relocated in the Sequence Capture design to improve capture uniformity.

Protocol

Roche NimbleGen offers SeqCap EZ Library as a solution-based method for target enrichment.

Sequence Capture Protocols

  1. Genomic DNA: SeqCap EZ Oligo pool is made against target regions in the genome.
  2. Library Preparation: Standard shot-gun sequencing library is made from genomic DNA.
  3. Hybridization: The sequencing library is hybridized to the SeqCap EZ Oligo pool.
  4. Bead Capture: Streptavidin beads are used to pull down the complex of capture oligos and genomic DNA fragments.
  5. Washing: Unbound fragments are removed by washing.
  6. Amplification: Enriched fragment pool is amplified by PCR.
  7. Enrichment QC: The success of enrichment is measured by qPCR at control loci.
  8. Sequencing-Ready DNA: The end product is a sequencing library enriched for target regions, ready for high throughput sequencing.

Reagents

Use SeqCap EZ Hybridization and Wash Kits to perform hybridization and wash steps in sequence capture protocols using NimbleGen SeqCap EZ products. The kits are available in handy 24 and 96 reaction pack sizes.

Description Catalog Number Pack Size Kit Capacity Compatible Applications Ordering*
SeqCap EZ Hybridization and Wash Kits 05634261001 1 Kit 24 Reactions SeqCap EZ Library Buy Online Button
05634253001 1 Kit 96 Reactions
* Availability of products varies from country to country.

SeqCap EZ Developer Reagent serves as a universal reagent to block repetitive regions in the genome of SeqCap EZ Developer Libraries (e.g. plant and other non-human organisms) when species specific Cot-1 DNA is not available.

Description Catalog Number Pack Size Kit Capacity Compatible Products Ordering*
SeqCap EZ Developer Reagent 06684335001 1 Kit 1 mL SeqCap EZ Developer Library Contact Us to Purchase
* Availability of products varies from country to country.

Literature

Search the SeqCap EZ Library - Literature for more information.

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