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MS 200 Microarray Scanner

Roche NimbleGen Instruments

Roche NimbleGen now presents a complete, optimized workflow for NimbleGen DNA microarrays. This optimized workflow encompasses high-density NimbleGen arrays, 4-Bay and 12-Bay Hybridization Systems, Microarray Dryer, MS 200 Microarray Scanner, NimbleScan and SignalMap software , and a comprehensive range of kits and consumables to facilitate processing of NimbleGen DNA microarrays from hybridization through data analysis.

Overview

The NimbleGen 4-Bay and 12-Bay Hybridization Systems are designed for highly reproducible hybridization conditions with precision controlled temperature and active mixing to provide high sensitivity and specificity hybridization results.

The Mixers, a line of adhesive sample enclosures that provide containment and active mixing during hybridization, increasing both signal and stringency, are available in a range of configurations to support single sample (2.1M and 385K) and multiwell (3x720K, 12x135K, and 4x72K) array formats.

The NimbleGen Microarray Dryer helps to ensure production of high-quality images with minimal residue by completely removing wash solutions prior to scanning.

For NimbleGen Sequence Capture arrays, the NimbleGen Elution System facilitates the elution of enriched DNA from the surface of the following hybridization and washing procedures.

The MS 200, a high-sensitivity laser scanner, reproducibly acquires two-color fluorescent image data down to 2 micron pixel resolution and allows completely automatic high-throughput image processing.

Roche NimbleGen offers a full line of kits and consumables that complement the Hybridization System. Specifically designed for the efficient, optimized hybridization and washing of NimbleGen arrays they work to produce clean, blemish-free hybridization results.

NimbleGen MS 200 Microarray Scanner
NimbleGen MS 200 Scanner

The NimbleGen MS 200 Microarray Scanner (shown at right) is the first scanner optimized to unleash the full potential and capture the complete picture from NimbleGen DNA microarrays. The MS 200 offers 2 micron resolution and heightened sensitivity to achieve high data quality and confident results from high-density NimbleGen microarrays of today and tomorrow. Critical to the the workflow, NimbleScan and SignalMap software are included to analyze and view the high-quality data from the MS 200.

High-throughput genomics research is now possible with the MS 200’s automated features, which are specifically designed for the NimbleGen microarray workflow. Advanced features such as a 48-slide autoloader, integrated barcode reader, autofocus, and auto gain combine to offer walkaway automation, allowing you to focus on your science.

For the complete list of advantages and supporting technical figures please visit the MS 200 Microarray Scanner page.

Ordering Information

Catalog Number Name
05394341001 MS 200 Microarray Scanner
(includes one MS 200 Slide Magazine and 3 individual licenses each of NimbleScan and SignalMap software)
The following are included with the purchase of a MS 200:
05394325001 MS Control Unit
05394333001 MS 200 Software
05394309001 MS 200 Operator’s Manual
The following accessory can be ordered separately:
05471478001 MS 200 Slide Magazine

Specifications

Pixel resolution 2μm, 5μm, 10μm, 20μm, 40μm
Dynamic range 105 ( 16-bit data format)
Recommended dyes Cyanine 3 (Cy3) and Cyanine 5 (Cy5)
Uniformity <4% CV global non-uniformity based on 22 x 60mm scan area
Limit of detection 0.0025 Cy3; 0.005 Cy5 (chromophores/μm2)
Autofocus Auto-adjusts for optimal focus position and angle to ensure features stay in focus while scanning
Light sources Two solid-state lasers (532nm and 635nm)
Slide magazine Holds up to 48 slides for walkaway automation
Slide scanning speed 2-color simultaneous data acquisition in 28 minutes for a 2.1M array at 2μm resolution with auto gain on
Auto gain adjustment 1-1000%; channels balanced
Scan window maximum 22 x 75mm
Pixel placement error <2 pixel shift in spatial position per 7,200 pixels scanned
Supported glass specifications 25 x 75mm (1 x 3in) glass slides - Agilent and NimbleGen glass slide dimensions

Detailed dimensions:
Width: 24.6 - 26.0mm
Length: 75.0 - 76.5mm
Thickness: 0.8 - 1.2mm
Supports non-mirrored glass slides
Ozone protection Carbon-filtered airflow
Barcode reader Reads Code 39 and Code 128 barcode formats
PC operating system Microsoft Windows Vista Business (64-bit)
Outer dimensions Width: 60.0cm (23.6in)
Height: 46.6cm (18.5in)
Depth: 61.8cm (24.4in)
Weight Approximately 38kg (84.0lb)
Power supply Auto sensing: 100 - 120V / 220 - 240V, 50/60Hz
NimbleGen Hybridization System

A Roche NimbleGen Hybridization System is your lab’s next step in increasing throughput while achieving consistent and reproducible microarray hybridization results. This easy-to-use system provides an active mixing action and constant incubation temperature to improve hybridization uniformity and enhance signal. Its robust and proven design ensures smooth operation every time, while its modular framework facilitates rapid scaleup of your microarray experiments. Choose between the 4-bay model (shown at right) or the 12-bay model (shown at top of page) to meet the throughput demands of your lab, utilizing just one bay or all of them as your day-to-day needs dictate.

Specifications

Capacity 4 slides (4-bay model)
12 slides (12-bay model)
Slide format Standard 1" x 3" (25.4mm x 76.2mm) glass microarray slide
Electrical requirements Power: 210W (heating) / 12W (mixing) (4-bay model)
580W total (12-bay model)
Temperature Ambient Operating Temperature: 16.5 - 27.5°C
Incubation Temperature Range: Ambient to 65°C
Temperature Control Precision: ± 0.5°C
Mixing parameters Four pre-programmed mix modes (4-bay model)
Two pre-programmed mix modes (12-bay model)

Ordering Information

Catalog Number Name Capacity
05223652001 NimbleGen Hybridization System 4 (110V) 4 slides
05223687001 NimbleGen Hybridization System 4 (220V) 4 slides
05223679001 NimbleGen Hybridization System 12 (110V) 12 slides
05223695001 NimbleGen Hybridization System 12 (220V) 12 slides
05223709001 Precision Mixer Alignment Tool (PMAT) NA
NimbleGen Microarray Dryer
NimbleGen Microarray Dryer

Effective washing and complete removal of wash solution prior to scanning is critically important when processing DNA microarrays. Salt crystallization and other residue formations resulting from insufficient washing or removal of wash solution can compromise vital data, contribute to high background signal, or both. Additionally, protection of the hybridized array from environmental degradation during the wet-to-dry transition is essential to maintain fluorescent signal.

The NimbleGen Microarray Dryer helps to ensure production of high-quality images with minimal residue without the use of noxious chemicals, such as acetonitrile. The array drying step is performed in a protected environment to reduce atmospheric and light-induced degradation of Cy dyes. A key component of the NimbleGen microarray workflow, the NimbleGen Microarray Dryer is used with NimbleGen Hybridization Systems, Mixers, and Wash Buffer Kits to provide the complete array processing solution for NimbleGen DNA Microarrays.

Ordering Information

Catalog Number Name Voltage
05223636001 NimbleGen Microarray Dryer 110V, 50/60Hz
05223644001 NimbleGen Microarray Dryer 220V, 50Hz

Specifications

Dimensions (W x D x H) 26.5 x 19.75 x 24 inches (673 x 501 x 610mm)
Weight 77lb (35kg)
Capacity Up to 24 slides
Slide formats Standard 1 x 3 inches (25.4 x 76.2mm) glass
Electrical Requirements 110V or 220V
Time to Maximum Speed <2 seconds
Maximum Speed 1,800rpm
Drying Time 2 minutes
Environmental Conditions Designed for indoor use only.
Relative humidity: <40% - non condensing
Permissible Ambient Temperature 15 - 25°C
Compliance Standards UL/EN 61010-1, EN 61010-2-20, IEC 61326-1
The NimbleGen Microarray Dryer complies with the requirements of the following European Directives:
  • 89/336/EEC (Electromagnetic Compatibility Directive)
  • 73/23/EEC (Low Voltage Equipment Directive)
NimbleGen Elution System

The NimbleGen Elution System (shown at right) is used in conjunction with an Elution Chamber (provided separately with each NimbleGen Sequence Capture array) to facilitate the elution of enriched DNA from the surface of a NimbleGen Sequence Capture array following hybridization and washing procedures. Please refer to the NimbleGen Arrays User’s Guide: Sequence Capture Array Delivery (Version 2.0) for more details).

The Elution System Retaining Ring secures the Elution Chamber and array firmly against the surface of the Elution System Base, while the Elution System Base conducts heat to the array surface to release captured DNA from the oligonucleotide probes and into solution.

NimbleGen Elution System Components

Catalog Number Component
05329752001 Elution System Base
05329787001 Elution System Retaining Ring
NimbleGen Mixers

Roche NimbleGen Mixers, which you adhere directly to microarray slides before sample loading and hybridization, are a key component of the NimbleGen Hybridization System. The Mixers allow for a 3-fold reduction of hybridization volume, leading to greater sensitivity and reliable results while economizing on sample requirements. They fit NimbleGen arrays precisely and have been optimized for NimbleGen array dimensions, ensuring uniform signal and high sensitivity with minimal sample volume.

Advantages

  • 3- to 10-fold increase in sensitivity
  • Consistent and reproducible results
  • Thorough and efficient active mixing
  • Shorter hybridization times
  • Minimal maintenance
NimbleGen Mixers
Name: NimbleGen HX1 Mixer
Compatible Array Format: 2.1M
Catalog Number Quantity
05391733001 5 Mixers
05223741001 10 Mixers
Name: NimbleGen HX3 Mixer
Compatible Array Format: 3x720K
Catalog Number Quantity
05391741001 5 Mixers
05223750001 10 Mixers
Name: NimbleGen HX12 Mixer
Compatible Array Format: 12x135K
Catalog Number Quantity
05391768001 5 Mixers
05223768001 10 Mixers
Name: NimbleGen X1 Mixer
Compatible Array Format: 385K
Catalog Number Quantity
05391717001 5 Mixers
05223725001 10 Mixers
Name: NimbleGen X4 Mixer
Compatible Array Format: 4x72K
Catalog Number Quantity
05391725001 5 Mixers
05223733001 10 Mixers
Literature

For a complete listing of literature covering all Roche NimbleGen products and services please visit our literature page.

 

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