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Gene Expression - Eukaryotic Designs


Roche NimbleGen’s broad range of eukaryotic arrays represent the latest builds for human and model genomes, including rat, mouse, zebrafish, Drosophila, C. elegans, yeast, and more. Many designs are available in both single and multiplex design formats, allowing for both genome-wide probe coverage and high-throughput analysis.

Array Specs
Array Format 385K 4x72K 12x135K
Number of Arrays per Slide 1 4 12
Total Number of Probes 385,000 4 x
72,000
12 x
135,000
Probe Length 60mer 60mer 60mer
Number of Probes per Target* 6 - 20 2 - 7 3 - 12
Number of Replicate Probe Sets per Array* 1 - 4 1 1 - 3
Feature Size 16 x 16μm 16 x 16μm 13 x 13μm
Array Size 17.4 x
13mm
7.8 x
5.7mm
8.9 x
6.5mm
Slide Size 1 x 3 in. (25 x 76 mm)
Recommended Storage Desiccated at room temperature.
* Depending on transcriptome size.
Arabidopsis thaliana
Source: TAIR
Build: TAIR 6.0
Accession Numbers: NC_003070, NC_003071, NC_003074, NC_003075, NC_003075
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A4352001-00-01 Arabidopsis 60mer expr Arabidopsis thaliana 385K Array
30,387
6
2
A4511001-00-01 ATH6 60mer expr X4 Arabidopsis thaliana 4x72K Array
30,361
2
1
A7239-00-01 080924 AT6 expr HX12 Arabidopsis thaliana 12x135K Array
30,380
4
1
Source: TAIR
Build: TAIR 8.0
Accession Numbers: NC_003070, NC_003071, NC_003074, NC_003075, NC_003075
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A7239-00-02 080924 Atha EXP HX12 Arabidopsis thaliana 12x135K v2 Array
34,236
4
1
Caenorhabditis elegans
Source: Wormbase
Build: WS160
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A4354001-00-01 C elegans 60mer expr Caenorhabditis elegans 385K Array
23,989
8
2
A4510001-00-01 CE WS160 60mer expr X4 Caenorhabditis elegans 4x72K Array
23,336
3
1
A7237-00-01 080924 CEws160 expr HX12 Caenorhabditis elegans 12x135K Array
23,945
5
1
Source: Wormbase
Build: WS190
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A7237-00-02 080828 Cele EXP HX12 Caenorhabditis elegans 12x135K v2 Array
23,187
6
1
Drosophila melanogaster
Source: Flybase
Build: DM4.3
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A4351001-00-01 Drosophila 60mer expr Drosophila melanogaster 385K Array
15,634
12
2
A4509001-00-01 DM4 3 60mer expr X4 Drosophila melanogaster 4x72K Array
15,473
4
1
A7238-00-01 080924 DMr43 expr HX12 Drosophila melanogaster 12x135K Array
15,595
8
1
Source: Flybase
Build: DM5.7
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A7238-00-02 080813 Dmel exp HX12 Drosophila melanogaster 12x135K v2 Array
16,637
8
1
Human
Source: NCBI
Build: HG18, Build 36
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A4542-00-01 HG18 60mer expr Homo sapiens 385K Array
47,633
8
1
A4487001-00-01 HG18 60mer expr 4plex Homo sapiens 4x72K Array
24,000
3
1
A6484-00-01 070925 HG18 expr HX12 Homo sapiens 12x135K Array
44,049
3
1
Mouse
Source: NCBI
Build: MM8
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A4543-00-01 MM8 60mer expr Mus musculus 385K Array
42,586
9
1
A4486001-00-01 MM8 60mer expr X4 Mus musculus 4x72K Array
18,869
3
1
A6485-00-01 080925 mm8 60mer expr HX12 Mus musculus 12x135K Array
42,576
3
1
Source: NCBI
Build: MM9
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A6485-00-02 080924 MM9 EXP HX12 Mus musculus 12x135K v2 Array
44,170
3
1
Rat
Source: Ensembl
Build: RGSC 3.4
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A6184-00-01 2007-07-20 Rat X1 expr Rattus norvegicus 385K Array
26,739
14
1
A6185-00-01 2007-07-20 Rat X4 expr Rattus norvegicus 4x72K Array
26,208
3
1
A6486-00-01 080925 Rat HX12 expr HX12 Rattus norvegicus 12x135K Array
26,419
5
1
Saccharomyces cerevisiae
Source: NCBI
Build: October 2003
Accession Numbers:NC_001133, NC_001134, NC_001135, NC_001136, NC_001137, NC_001138, NC_001139, NC_001140, NC_001141, NC_001142, NC_001143, NC_001144, NC_001145, NC_001146, NC_001147, NC_001148, NC_001224
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A4345001-00-01 TI4932 60mer Saccharomyces cerevisiae 385K Array
5,868
20
3
A6186-00-01 TI4932 60mer expr X4 Saccharomyces cerevisiae 4x72K Array
5,747
6
2
A7236-00-01 080924 SC expr HX12 Saccharomyces cerevisiae 12x135K Array
5,735
11
2
Source: NCBI
Build: June 2008
Accession Numbers:NC_001133, NC_001134, NC_001135, NC_001136, NC_001137, NC_001138, NC_001139, NC_001140, NC_001141, NC_001142, NC_001143, NC_001144, NC_001145, NC_001146, NC_001147, NC_001148, NC_001224
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A7236-00-02 080828 Scer EXP HX12 Saccharomyces cerevisiae 12x135K v2 Array
5,777
8
3
Schizosaccharomyces pombe
Source: NCBI
Build: June 2005
Accession Numbers: NC_003421, NC_003423, NC_003424
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A4346001-00-01 TI4896 60mer Schizosaccharomyces pombe 385K Array
5,040
19
4
A6187-00-01 TI4896 60mer expr X4 Schizosaccharomyces pombe 4x72K Array
4,997
7
2
A7235-00-01 080924 SP expr HX12 Schizosaccharomyces pombe 12x135K Array
4,976
12
2
Source: NCBI
Build: June 2008
Accession Numbers: NC_003421, NC_003423, NC_003424
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A7235-00-02 080828 Spom EXP HX12 Schizosaccharomyces pombe 12x135K v2 Array
4,942
9
3
Zebrafish New Design!
Source: Ensembl and UCSC
Build: Zv7
Catalog Number Design Name Description
Genes
Probes/ Target
Replicates
A7141-00-01 071105 Zv7 EXPR Danio rerio 385K Array
37,157
12
1
 

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