Download the complete 9-file set!
Note: Features in some of these files may be more easily viewed by changing the feature style from dots to bars in SignalMap software. To do this, select the track by clicking its Y axis and select Track -> Style -> Bars.
- Genes.gff: Indicates all genes for build hg18 as reported in the UCSC Genome browser (http://genome.ucsc.edu). Genes annotated above the baseline in each track represent features identified on the sense strand, while entries below the baseline represent features identified on the antisense strand.
- Genes_Exon-Intron.gff: Indicates the exon-intron boundaries of all genes for build hg18 as reported in the UCSC Genome browser. Exons are denoted as dark blue bars, and introns are denoted as light blue bars.
- Transcription_Start_Sites.gff: Indicates all transcription initiation sites for build hg18 as reported in the UCSC Genome browser.
- Structural_Variants.gff: Displays all copy number variants as reported in the Database of Genomic Variants (http://projects.tcag.ca/variation).
- 42M_CNV_Regions.gff track*: Displays CNVs identified by the Genome Structural Variation Consortium in a high-resolution CNV discovery project (http://www.sanger.ac.uk/humgen/cnv/42mio). In this study, common CNVs > 500bp were identified from 20 CEU and 20 YRI HapMap samples using a set of NimbleGen CGH arrays that contains approximately 42 million probes tiled across the genome.
- NimbleGen_CNV_Regions.gff track*: Displays CNVs from Asian research samples identified by Roche NimbleGen using high-resolution NimbleGen CGH arrays.
- Segmental_Duplications.gff: Displays regions of genomic duplication > 1kb in size and with > 90% sequence identity after masking high-copy repeat regions (Bailey, et al. Genome Res. 2001; 11:1005-17) as reported in the UCSC Genome browser. The level of similarity is indicated as follows: light to dark gray bars = 90 - 98% similarity, light to dark yellow bars = 98 - 99% similarity, light to dark orange bars ≥ 99% similarity; red =
duplications of > 98% that lack sufficient evidence in the Segmental Duplication database.
- Cytogenetic_Ideogram.gff: Displays the cytogenetic bands, in grayscale format, for each chromosome as reported in the UCSC Genome browser.
- miRNA.gff: Indicates all miRNAs as reported in the miRBase database (http://microrna.sanger.ac.uk/). Each feature represents the entire hairpin sequence for the miRNA.
* All of the CNVs shown in the 42M_CNV_Regions and NimbleGen_CNV_Regions are included on the NimbleGen
Human CNV Arrays.
